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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015815911.1_cds_XP_016498544.1_12562
CDS Infomation

[gene=LOC107817260] [db_xref=GeneID:107817260] [protein=ER membrane protein complex subunit 1-like] [protein_id=XP_016498544.1] [location=join(16280..16374,16563..16690,16839..16901,18272..18393,18610..18725,18810..19617,20075..20806,22110..22331,22455..22550,22633..22827,23052..23165,24517..24777)] [gbkey=CDS]
Sequence

ATGGCGATTAGAGCTTTTCTTCTCCTACTAATCTTATTCTCTTCGTCTTATTATGCCGTC
GCTCTTTATGAAGATCAAGTTGGCCTCATGGACTGGCATCAACAATACATTGGAAAAGTG
AAAAACGCAGTTTTTCAAACCCAGAAGGCTGGTAGGAAGCGTGTTGTAGTATCTACCGAA
GAGAATGTCATTGCTTCGCTGGATCTTCGCCACGGCGAGATTTTTTGGAGGCATGTTTTG
GGGGACAATGACACCATTGATGCGATTGATATCTCCATGGGAAAATATGTTATCACCCTA
TCATCAGGGGGAAGCATTTTAAGAGCTTGGAACCTTCCTGATGGCCAGATGGTGTGGGAG
TCGTTCCTTCGTGGATTAAAGCCCTCCAGGTCATTGTTATTGACTCCAACGAACTTGAAA
GCTGACAAGGACAATGTGATTCTTGTGTATGGCAATGGCTACCTGCATTATCTTTCGAGC
ATTGATGGTGACATTCTCTGGAAGATGGATTTATCACATAAAGGCGTTGACATTCAACAT
TTGATTCATCCGGAAGGAAGTGAGACAATATATGCTATAGGAGTGAGTGATTTGTCCCAG
TTTGAAGCATATATAATCAATGCTAGGAGTGGTGAACTGCTGAAGCACAGCAGTATGTCA
TTTCCTGGTGGATTTTCCGGTGATATATCTCTGGTCGCAAGTGACAAAGCTGTGGTGCTG
GACTCTTCTGGGTCAATTTTAGTCTCTATAAGCTTCATTGAGGGAGAAATAAAATTTCAG
CCGGTGAACATTGCCAATCTTGTTCAGCACATCTCAGGCTCGGCAGTGCTATTGCCTTCT
AAACTTGCAGGAATGGTCGCTGTGAAAATTGGGAAATCTTTGTCATTCATCAAAGTTACC
AATGAAGGCAGATTGGAGGCGGTAGATACAATTCCTCATGTTGAAGCTGTAAGTGATTCT
TTGCCTTTTTCAGAAGGCCAAAGCGGTTTTGGGCTGATTCAGCATGATGGTACCAAGATT
CATCTCACATTAAAGACTGGTAATGATTGGAAGAGCCATTTACTTAAAGAAAGTTTCAAA
ATAGACCAACATAGGGGACTTGTCCATAAGGTTTTCATCAACAACTATATCCGGACAGAC
CGAACATATGGATTTAGGGCTTTGATTGTCATGGAAGACCATTCACTGCTATTGATGCAG
CAGAGTGAGATTGTTTGGAATAGAGAAGATGGACTTGCATCTATTATAGATGTTACAACC
TCAGAATTGCCTGTAGAGAAGGATGGGGTCTCTGTCGCAAAAGTGGAGCATAGCCTCTTT
GAATGGCTCAAGGGACATCTGCTGAAACTTAAAGGGACCCTAATGCTTGCCACCCCTGAT
GATATAGCAGTGATTCAGAGACTGAGGTTACAAAGTGCTGAGAAAAGCAAGATGACTCGA
GACCACAATGGGTTTAGGAAGCTACTCATTGTACTTACGCGAGCAGGAAAACTTTTTGCT
ATTCACACAGGAGATGGGAGAATTGTTTGGTCTCTCTTACTGAATGCTTTTCGTAAATCA
GTGACATGTGAAAATCCCAGGGGGCTCAAGATACATCAGTGGCAGGTGCCCCATCATCAT
GCATTAGATGAGAACCCATCAGTCCTTGTGGTTGGCACTTGTGGACTTAATTCAGATGCA
TCTGGAATTCTCTCTTTTGTTGATGCTTACAAAGGAGTGGAGCTTAATTACATAGCACCT
CATCATTCTATTTCACAAGTTATTCCACTGCCATTTACGGATTCCATCGAGCAGCGCCTG
CATCTGCTAATAGATGCTGAGGGGTATGGCCACCTGTATCCCAAAAATCCTGAGGCAATT
AGCATTTTTCAGGAGGAGTTGGGAAACATATATTGGTACTCAGTTGAAGTAAATAGTAAT
GTCTTAAGGGGACATGTGGTGAAGAAGAATTGCGTACCTGAGATAGGTGATGACTATCGT
TTTGAATCCAGTGACCTTTGGTCTGTTGTATTCCCCTCGGATTCAGAAAAGATCATTGCA
ACATCAACAAGAAAACTAAGTGAGGTGGTTCATACACAAGCTAAGGTAACATCGGACCAG
GATGTGTCGTACAAATATATATCTAAGAATCTTCTGTTTGTGGCCACTGTTACACCCAAA
TCTACTGGTGAGATTGGCTCAGTAATTCCAGAAGATTCCTGGCTGTTTGTTTATCTTGTT
GACACGATAACTGGCCGTGTACTGCACCGGATGTCTCATCATGGCTCGCAGGGACCTGTC
CATGCAGTCTTTAGTGAGAATTGGGTTGTCTACCACTACTTCAATCTACGAGCACATAGA
TATGAAATGTCTGTCATTGAGATCTATGATCAGTCTCGAGCGGACAACAAAGATGTGTTG
AAGCTTGTGTTGGGAAAGCATAATCTCACAGCAGCTCTCTCTTCCTACTCACGTCCTGAA
GTGATAACTAAATCTCAATCGTACTTTTTCCCACACTCTGTGAAAACAATGGCAGTGACG
GCAACAGCAAAAGGCATTACTTCCAGGCAGCTGCTTATTGGTACAATTGGGGATCAGGTT
TTGGCACTTGACAAGCGTTATCTAGATCCTCGAAGAACAGTGAACCCTACTCAAGCTGAA
AAAGAGGAAGGGATTATACCTCTTACCGACACATTGCCAATTATGCCACAGGCTTATGTC
ACACATGCCCTTAAAGTGGAAGGCCTTAGAAACATAATAACTGTACCAGCAAAGCTGGAG
TCGACCACCCTTGTCTTTGCTCATGGAGTGGATCTCTTTTTCACTCGGCTCGCTCCTTCA
AGAACCTATGACTCTCTTACTGAAGATTTCAGTTATGCTTTGCTTCTCATCACGATAGTT
GCCCTTGTTATAGCAATTTTTGTAACATGGATTTGGTCTGAGAGGAAAGAGTTAGAGGAG
AAGTGGCGGTAA

Peptide Sequence

PEP ID

XP_016498544.1
PEP Infomation

PREDICTED: ER membrane protein complex subunit 1-like [Nicotiana tabacum]
Sequence

MAIRAFLLLLILFSSSYYAVALYEDQVGLMDWHQQYIGKVKNAVFQTQKAGRKRVVVSTE
ENVIASLDLRHGEIFWRHVLGDNDTIDAIDISMGKYVITLSSGGSILRAWNLPDGQMVWE
SFLRGLKPSRSLLLTPTNLKADKDNVILVYGNGYLHYLSSIDGDILWKMDLSHKGVDIQH
LIHPEGSETIYAIGVSDLSQFEAYIINARSGELLKHSSMSFPGGFSGDISLVASDKAVVL
DSSGSILVSISFIEGEIKFQPVNIANLVQHISGSAVLLPSKLAGMVAVKIGKSLSFIKVT
NEGRLEAVDTIPHVEAVSDSLPFSEGQSGFGLIQHDGTKIHLTLKTGNDWKSHLLKESFK
IDQHRGLVHKVFINNYIRTDRTYGFRALIVMEDHSLLLMQQSEIVWNREDGLASIIDVTT
SELPVEKDGVSVAKVEHSLFEWLKGHLLKLKGTLMLATPDDIAVIQRLRLQSAEKSKMTR
DHNGFRKLLIVLTRAGKLFAIHTGDGRIVWSLLLNAFRKSVTCENPRGLKIHQWQVPHHH
ALDENPSVLVVGTCGLNSDASGILSFVDAYKGVELNYIAPHHSISQVIPLPFTDSIEQRL
HLLIDAEGYGHLYPKNPEAISIFQEELGNIYWYSVEVNSNVLRGHVVKKNCVPEIGDDYR
FESSDLWSVVFPSDSEKIIATSTRKLSEVVHTQAKVTSDQDVSYKYISKNLLFVATVTPK
STGEIGSVIPEDSWLFVYLVDTITGRVLHRMSHHGSQGPVHAVFSENWVVYHYFNLRAHR
YEMSVIEIYDQSRADNKDVLKLVLGKHNLTAALSSYSRPEVITKSQSYFFPHSVKTMAVT
ATAKGITSRQLLIGTIGDQVLALDKRYLDPRRTVNPTQAEKEEGIIPLTDTLPIMPQAYV
THALKVEGLRNIITVPAKLESTTLVFAHGVDLFFTRLAPSRTYDSLTEDFSYALLLITIV
ALVIAIFVTWIWSERKELEEKWR

Transcript Sequence

Gene sequence data has not been registered.